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Anthes, N. (2006). Mating conflicts and their evolution in simultaneously hermaphroditic sea slugs. PhD thesis, Eberhard Karls Universität Tübingen, Germany.

Anthes, N., A. Putz and N.K. Michiels (2006). Hermaphrodite sex role preferences: the role of partner body size, mating history and female fitness in the sea slug Chelidonura sandrana. Behavioural Ecology and Sociobiology, 60: 359:367.

Arnal, C., O. Verneau and Y. Desdevises (2006). Phylogenetic relationships and evolution of cleaning behaviour in the family Labridae: importance of body colour pattern. Journal of Evolutionary Biology, 19: 755-763.

Barnett, A., D.R. Bellwood and A.S. Hoey (2006). Trophic ecomorphology of cardinalfish. Marine Ecology Progress Series, 322: 249-257.

Bay, L.K., K. Büchler, M. Gagliano and M.J. Caley (2006). Intraspecific variation in the pelagic larval duration of tropical reef fishes. Journal of Fish Biology, 68: 1206-1214.

Bay, L.K., R.H. Crozier and M.J. Caley (2006). The relationship between population genetic structure and pelagic larval duration in coral reef fishes on the Great Barrier Reef. Marine Biology, DOI 10.1007/s00227-006-0276-6.

Becker, J.H.A. (2006). Interactions between cleaner shrimp and their client fishes on coral reefs.
PhD thesis, University of Queensland.

Bellwood, D.R., P.C. Wainwright, C.J. Fulton and A.S. Hoey (2006). Functional versatility supports coral reef biodiversity. Proceedings of the Royal Society B, 273: 101-107.

Berumen, M.L. (2006). Influence of resource availability on life-history traits in coral-feeding butterflyfishes (Pisces: Chaetodontidae). PhD thesis, James Cook University, Australia.

Berumen, M.L. and M.S. Pratchett (2006). Effects of resource availability on the competitive behaviour of butterflyfishes. Proceedings of the 10th International Coral Reef Symposium, 644-650.

Bott, N.J. (2006). Bivalves and the Bucephalidae: a parasitic system on the Great Barrier Reef.
PhD thesis, University of Queensland.

Boyett, H.V. (2006). The ecology and microbiology of black band disease and brown band syndrome on the Great Barrier Reef. MSc thesis, James Cook University.

Bshary, R. and A.S. Grutter (2006). Image scoring and cooperation in a cleaner fish mutualism. Nature, 441: 977-978.

Burghardt, I. (2006). Biologie, Diversitaet und Evolution "solarbetriebener" Nudibranchia (Mollusca: Gastropoda) und ihrer Symbiose mit Zooxanthellen. PhD thesis, Ruhr-Universitaet Bochum, Germany.

Burghardt, I. and H. Waegele (2006). Interspecific differences in the efficiency and photosynthetic characteristics of the symbiosis of "solarpowered" Nudibranchia (Mollusca: Gastropoda). In: Contemporary studies into the systematics and evolution of opisthobranch molluscs, (Eds. G. Brodie, S. Fahey and F.E. Wells), Records of the Western Australian Museum, Supplement 69: 1-10.

Chambers, C.B. and T.H. Cribb (2006). Phylogeny, evolution and biogeography of the Quadrifoliovariinae Yamaguti, 1965 (Digenea: Lecithasteridae). Systematic Parasitology, 63: 61-82.

Choat, J.H., C.R. Davies, J.L. Ackerman and B.D. Mapstone (2006). Age structure and growth in a large teleost, Cheilinus undulatus, with a review of size distribution in labrid fishes. Marine Ecology Progress Series, 318: 237-246.

Coetzee, M.L. (2006). The taxonomy and phylogeny of three gnathiid isopod species parasitising elasmobranchs from the Great Barrier Reef, Australia. M.Sc. Thesis, University of Johannesburg, South Africa.

Cronin, T.W., R.L. Caldwell and J. Marshall (2006). Learning in stomatopod crustaceans. International Journal of Comparative Psychology, 19: 297-317.

Depczynski, M. (2006). Small cryptic fishes on coral reefs: a new perspective on reef fish ecology and life histories. PhD thesis, James Cook University.

Depczynski, M and D.R. Bellwood (2006). Extremes, plasticity, and invariance in vertebrate life history traits: insights from coral reef fishes. Ecology, 87: 3119-3127.

Dornelas, M. (2006). Coral assemblages and neutral theory. PhD thesis, James Cook University.

Doving, K.B., O.B. Stabell, S. Östlund-Nilsson and R. Fisher (2006). Site fidelity and homing in tropical coral reef cardinalfish: are they using olfactory cues? Chemical Senses, 31: 265-272.

Fraser, T.H. and G.R. Allen (2006). A new species of Neamia (Perciformes: Apogonidae) from the West Pacific Ocean. Memoirs of Museum Victoria, 63: 1-5.

Gagliano, M. (2006). The role of early life history traits on the survival of a coral reef fish. PhD thesis, James Cook University.

Gagliano, M., S. Kowalewsky and M.I. McCormick (2006). An alternative method for the preservation of tropical fish larvae. Journal of Fish Biology, 68: 634 - 639.

Game, E.T. and M.J. Caley (2006). The stability of P in coral reef fishes. Evolution, 60: 814-823.

Guerra-Garcia, J. (2006). Caprellidae (Crustacea: Amphipoda) from the Great Barrier Reef and adjacent localities. Records of the Australian Museum, 58: 417-458.

Hoey, A.S. and M.I. McCormick (2006). Effects of subcutaneous fluorescent tags on the growth and survival of a newly settled coral reef fish, Pomacentrus amboinensis (Pomacentridae). Proceedings of the 10th International Coral Reef Symposium, 420-424.

Hoggett, A.K. (2006). A new species of Macrophiothrix (Ophiuroidea: Ophiotrichidae) common in northern Australia. Zootaxa, 1326: 17-24.

Holmes, T.H and M.I. McCormick (2006). Location influences size-selective predation on newly settled reef fish. Marine Ecology Progress Series, 317: 203-209.

Jones, C.M. and A.S. Grutter (2006). Variation in emergence of parasitic and predatory isopods among habitats at Lizard Island, Great Barrier Reef. Marine Biology, COI 10.1007/s00227-006-0416-z.

Kassahn, A.S. (2006). A microarray approach to understanding stress in a coral reef fish. PhD thesis, James Cook University.

Klussmann-Kolb, A. and A. Dinapoli (2006). Systematic position of the pelagic Thecosomata and Gymnosomata within Opisthobranchia (Mollusca, Gastropoda) - revival of the Pteropoda. Journal of Zoological Systematics and Evolutionary Research, 44(2): 118-129.

Lachlan, R.B. (2006). New records of hawk moths and butterflies (Lepidoptera) from Lizard Island, northern Queensland. Australian Entomologist, 33: 133-135.

Lee, J.J. (2006). Algal symbiosis in larger foraminifera. Symbiosis, 42: 63-75.

Leis, J.M. (2006). Are larvae of demersal fishes plankton or nekton? Advances in Marine Biology, 51: 57- 141.

Leis, J.M. and R. Fisher (2006). Swimming speed of settlement-stage reef-fish larvae measured in the laboratory and in the field: a comparison of critical speed and in situ speed. Proceedings of the 10th International Coral Reef Symposium, 438-445.

Livett, B.G., D.W. Sandall, D. Keays, J. Down, K.R. Gayler, N. Satkunanathan and Z. Khalil, 2006. Therapeutic applications of conotoxins that target the neuronal nicotinic acetylcholine receptor. Toxicon, 48: 810-829.

Madin, J.S. and S.R. Connolly (2006). Ecological consequences of major hydrodynamic disturbances on coral reefs. Nature, 444: 477-480.

Madin, J.S., K.P. Black and S.R. Connolly (2006). Scaling water motion on coral reefs: from regional to organismal scales. Coral Reefs, 25: 635 - 644.

McCormick, M.I. (2006). Mothers matter: crowding leads to stressed mothers and smaller offspring in marine fish. Ecology, 87: 1104-1109.

McCormick, M.I. (2006). Distress a normal part of life for a damsel. Australasian Science, October 2006: 29-31.

McCormick, M.I. and A.S. Hoey (2006). Biological and physical correlates of settlement and survival for a coral reef fish, Pomacentrus ambioinensis (Pomacentridae). Proceedings of the 10th International Coral Reef Symposium, 425-430.

McCormick, M.I. and T.H. Holmes (2006). Prey experience of predation influences mortality rates at settlement in a coral reef fish, Pomacentrus amboinensis. Journal of Fish Biology, 68: 969-974.

Messing, C.G., D.L. Meyer, U.E. Siebeck, L.S. Jermiin, D.I. Vaney and G.W. Rouse (2006). A modern soft-bottom, shallow-water crinoid fauna (Echinodermata) from the Great Barrier Reef, Australia. Coral Reefs, 25: 164-168.

Miller, T.L. and T.H. Cribb (2006). A new genus and species of cryptogonimid from Lutjanus spp. (Pisces: Lutjanidae) on the Great Barrier Reef and New Caledonia. Journal of Parasitology, 91: 922-924.

Muñoz, G. and T.H. Cribb (2006). Parasite communities and diet of Coris batuensis (Pisces: Labridae) from Lizard Island, Great Barrier Reef. Memoirs of the Queensland Museum, 52: 191-198.

Muñoz, G., A.S. Grutter and T.H. Cribb (2006). Endoparasite communities of five fish species (Labridae: Cheilininae) from Lizard Island: how important is the ecology and phylogeny of the hosts? Parasitology, 132: 363-374.

Nagel, L. and S.C. Lougheed, 2006. A simple molecular technique for identifying marine host fish by sequencing blood-feeding parasites. Journal of Parasitology, 92(3): 665-668.

Nolan, M.J. and T.H. Cribb (2006). Cardicola Short, 1953 and Braya n.gen. (Digenea: Sanguinicolidae) from five families of tropical Indo-Pacific fishes. Zootaxa, 1265: 1-80.

Nolan, M.J. and T.H. Cribb (2006). An exceptionally rich complex of Sanguinicolidae von Graff, 1907 (Platyhelminthes: Trematoda) from Siganidae, Labridae and Mullidae (Teleostei: Perciformes) from the Indo-west Pacific region. Zootaxa, 1218: 3-80.

Page, C. and B. Willis (2006). Distribution, host range and large-scale spatial variability in black band disease prevalence on the Great Barrier Reef, Australia. Diseases of Aquatic Organisms, 69: 41-51.

Pears, R.J., J.H. Choat, B.D. Mapstone and G.A. Begg (2006). Demography of a large grouper, Epinephelus fuscoguttatus, from Australia's Great Barrier Reef: implications for fishery management. Marine Ecology Progress Series, 307: 259-272.

Pennisi, E. (2006). Plant wannabes. Science, 313: 1229.

Rees, S.A., B.N. Opdyke, P.A. Wilson, L.K. Fifield and V. Levchenko (2006). Holocene evolution of the granite based Lizard Island and MacGillivray Reef systems, Northern Great Barrier Reef. Coral Reefs, 25: 555-568.

Robbins, W.D. (2006). Abundance, demography and population structure of the grey reef shark (Carcharinus amblyrhynchos) and the whitetip reef shark (Triaenodon obesus) (Family Carcharhinidae). PhD thesis, James Cook University, Australia.

Robbins, W.D., M. Hisano, S.R. Connolly and J.H. Choat (2006). Ongoing collapse of coral-reef shark populations. Current Biology, 16: 2314-2319.

San Martin, G. and P. Hutchings (2006). Eusyllinae (Polychaeta: Syllidae) from Australia with the description of a new genus and fifteen new species. Records of the Australian Museum, 58: 257-370.

Scardino, A.J. (2006). Biomimetic foulding control. PhD thesis, James Cook University

Smit, N.J., A.S. Grutter, R.D. Adlard and A.J. Davies (2006). Hematozoa of teleosts from Lizard Island, Australia, with some comments on their possible mode of transmission and the description of a new hemogregarine species. Journal of Parasitology, 92: 778-788.

Smykowski, A. (2006). Sexual conflict in a simultaneous hermaphrodite: how to enforce unilateral matings. Diploma thesis, Univerity of Tübingen, Germany.

Syme, A.E. and G.C.B. Poore (2006). Three new ostracod species from coastal Australian waters (Crustacea: Ostracoda: Myodocopa: Cylindroleberididae). Zootaxa, 1305: 51-67.

Wägele, H., I. Burghardt, N. Anthes, J. Evertsen, A. Klussman-Kolb and G. Brodie (2006). Species diversity of opisthobranch molluscs on Lizard Island, Great Barrier Reef, Australia. In: Contemporary studies into the systematics and evolution of opisthobranch molluscs, (Eds. G. Brodie, S. Fahey and F.E. Wells), Records of the Western Australian Museum, Supplement 69: 33-59.

Wilson, S.K., N.A.J. Graham, M.S. Pratchett, G.P. Jones and N.V.C. Polunin (2006). Multiple disturbances and the global degradation of coral reefs: are reef fishes at risk or resilient? Global Change Biology, 12: 2220-2234.

Yokobori, S., A. Kurabayashi, B.A. Neilan, T. Maruyama and E. Hirose, 2006. Multiple origins of the ascidian-Prochloron symbiosis: Molecular phylogeny of photosymbiotic and non-symbiotic colonial ascidians inferred from 18S rDNA sequences. Molecular Phylogenetics and Evolution, 40: 8-19.