Abdulla, A (2004). Predator-prey interactions in coral reef fish: the implications of predation risk on the behaviour and growth of prey. PhD thesis, James Cook University.

Ackerman, J. (2004). Geographic variation in size at age of the coral reef fish, Thalassoma lunare (Family Labridae): a contribution to life history theory. PhD thesis, James Cook University.

Almany, G.R. (2004). Priority effects in coral reef fish communities of the Great Barrier Reef. Ecology, 85: 2872-2880.

Almany, G.R. and M.S. Webster (2004). Odd species out as predators reduce diversity of coral-reef fishes. Ecology, 85: 2933-2937.

Ayre, D.J. and T.P Hughes (2004). Climate change, genotypic diversity and gene flow in reef-building corals. Ecology Letters, 7: 273-278.

Barnett, A. (2004). The trophic and reproductive implications of mouthbrooding in apogonid fishes. Honours thesis, James Cook University.

Bay, L.K., J.H. Choat, L. van Herwerden and D.R. Robertson (2004). High genetic diversities and complex genetic structure in an Indo-Pacific tropical reef fish (Chlorurus sordidus): evidence of an unstable evolutionary past? Marine Biology, 144: 757-767.

Becker, J.H. and A.S. Grutter (2004). Cleaner shrimp do clean. Coral Reefs, 23: 515-520.

Bellwood, D.R., T.P. Hughes, C. Folke and M. Nystrom (2004). Confronting the coral reef crisis. Nature, 429: 827-833.

Bernardi, G., G. Bucciarelli, D. Costagliola, D.R. Robertson and J.B. Heiser (2004). Evolution of coral reef fish Thalassoma spp. (Labridae). 1. Molecular phylogeny and biogeography. Marine Biology, 144: 369-375.

Cribb, B.W. and I.D. Whittington, 2004. Anterior adhesive areas and adjacent secretions in the parasitic flatworms Decacotyle lymmae and D. tetrakordyle (Monogenea: Monocotylidae) from the gills of stingrays. Invertebrate Biology 123(1): 68-77.

Grutter, A.S. and R. Bshary, 2004. Cleaner fish, Labroides dimidiatus, diet preferences for different types of mucus and parasitic gnathiid isopods. Animal Behaviour, 68: 583-588.

Gyuris, E. (2004). An experimental investigation of the effects of human intrusion into breeding colonies of bridled terns Sterna anaethetus in the Great Barrier Reef. Pacific Conservation Biology, 9: 265-72.

Bellwood, D.R., L. van Herwerden and N. Konow (2004). Evolution and biogeography of marine angelfishes (Pisces: Pomacanthidae). Molecular Phylogenetics and Evolution, 33: 140-155.

Beukers-Stewart, B.D and G.P. Jones (2004). The influence of prey abundance on the feeding ecology of two piscivorous species of coral reef fish. Journal of Experimental Marine Biology and Ecology, 299: 155-184.

Choat, J.H., K.D. Clements and W.D. Robbins (2004). The trophic status of herbivorous fishes on coral reefs 2: Food processing modes and trophodynamics. Marine Biology, 145: 445-454.

Fisher, R. and S.K. Wilson (2004). Maximum sustainable swimming speeds of late-stage larvae of nine species of reef fishes. Journal of Experimental Marine Biology and Ecology, 312: 171-186.

Gagliano, M. and M.I. McCormick (2004). Feeding history influences otolith shape in tropical fish. Marine Ecology Progress Series, 278: 291-296.

Gedamke, J. (2004). Minke whale song, spacing, and acoustic communication on the Great Barrier Reef, Australia. PhD thesis, University of California at Santa Cruz, USA.

Grutter, A.S. (2004). Cleaner fish use tactile dancing behavior as a preconflict management strategy. Current Biology, 14: 1080-1083.

Gust, N. (2004). Variation in the population biology of protogynous coral reef fishes over tens of kilometres. Canadian Journal of Fisheries and Aquatic Sciences, 61: 205-218.

Gyuris, E. (2004). An experimental investigation of the effects of human intrusion into breeding colonies of bridled terns Sterna anaethetus in the Great Barrier Reef. Pacific Conservation Biology, 9: 265-72.

Hall, K.A. and T.H. Cribb (2004). Ptychogyliauchen, a new genus of Gyliauchenidae (Platyhelminthes: Digenea) from siganid fishes of the Indo-West Pacific. Invertebrate Systematics, 18: 607-625.

Hall, K.A. and T.H. Cribb (2004). Revision of Affecauda Hall & Chambers, 1999 (Digenea, Gyliauchenidae Fukui, 1929), including description of two new species from fishes of the Indo-West Pacific. Zootaxa, 778: 1-12.

Harrington, L.M. (2004). Ecology of crustose coralline algae; interactions with scleractinian corals and responses to environmental conditions. PhD thesis, James Cook University.

Harrington, L.., K. Fabricius, G. De'ath and A. Negri, 2004. Recognition and selection of settlement substrata determine post-settlement survival in corals. Ecology, 85: 3428-3437.

Hobbs, J.-P.A. and P.L. Munday (2004). Intraspecific competition controls spatial distribution and social organisation of the coral-dwelling goby Gobiodon histrio. Marine Ecology Progress Series, 278: 253-259.

Hobbs, J.-P.A., P.L. Munday and G.P. Jones (2004). Social induction of maturation and sex determination in a coral reef fish. Proceedings of the Royal Society, London, B, 271: 2109-2114.

Hoey, A.S. and M.I. McCormick (2004). Selective predation for low body condition at the larval-juvenile transition of a coral reef fish. Oecologia, 139: 23-29.

Holmes, T.H. (2004). Selectivity of predation on a newly settled tropical reef fish, Pomacentrus amboinensis (Pomacentridae). Honours thesis, James Cook University.

Jones, C.M., A.S. Grutter and T.H. Cribb (2004). Cleaner fish become hosts: a novel form of parasite transmission. Coral Reefs, 23: 521-529.

Kritzer, J.P. (2004). Sex-specific growth and mortality, spawning season, and female maturation of the stripey bass (Lutjanus carponotatus) on the Great Barrier Reef. Fishery Bulletin, 102: 94-107.

Lachlan, R.B. (2004). Description of a second species of Gnathothilibus Wallengren (Lepidoptera: Sphingidae) from Australia. Australian Entomologist, 31: 111-118.

Lee, J.L., B. Burnham and M.E. Cevasco (2004). A new modern soritid foraminifer, Amphisaurus saurensis n. sp., from the Lizard Island Group (Great Barrier Reef, Australia). Micropaleontology, 50: 357-368.

Leis, J.M. (2004). Vertical distribution behaviour and its spatial variation in late-stage larvae of coral-reef fishes during the day. Marine and Freshwater Behaviour and Physiology, 37: 65-88.

MacKenzie, J.B., P.L. Munday, B.L. Willis, D.J. Miller and M.J.H. Van Oppen (2004). Unexpected patterns of genetic structuring among locations but not colour morphs in Acropora nasuta (Cnidaria: Scleractinia). Molecular Ecology, 13: 9-20.

Madin, J.S. (2004). A mechanistic approach to understanding and predicting hydrodynamic disturbance on coral reefs. PhD thesis, James Cook University.

Mapstone, B.D., C.R. Davies, L.R. Little, A.E. Punt, A.D.M. Smith, F. Pantus, D.C. Lou, A.J. Williams, A. Jones, A.M. Ayling, G.R. Russ (2004). The effects of line fishing on the Great Barrier Reef and evaluations of alternative potential management strategies. Techincal Report, CRC Reef Research Centre, 52: 1-205.

McCormick, M.I. and A.S. Hoey (2004). Larval growth history determines juvenile growth and survival in a tropical marine fish. Oikos, 106: 225-242.

McCormick, M.I. and S. Smith (2004). Efficacy of passive integrated transponder tags to determine spawning site visitations by tropical fish. Coral Reefs, 23: 570-577.

Munday, P.L. (2004). Competitive coexistence of coral-dwelling fishes: the lottery hypothesis revisited. Ecology, 85: 623-628.

Munday, P.L., A.L. Hodges, J.H. Choat and N. Gust (2004). Sex-specific growth effects in protogynous hermaphrodites. Canadian Journal of Fisheries and Aquatic Sciences, 61: 323-327.

Munday, P.L., L. van Herwerden and C.L. Dudgeon (2004). Evidence for sympatric speciation by host shift in the sea. Current Biology, 14: 1498-1504.

Nilsson, G.E., J.-P. Hobbs, P.L. Munday and S. Ostlund-Nilsson (2004). Coward or braveheart: extreme habitat fidelity through hypoxia tolerance in a coral-dwelling goby. The Journal of Experimental Biology, 207: 33-39.

Nolan, M.J. and T.H. Cribb (2004). Two new blood flukes (Digenea: Sanguinicolidae) from Epinephelinae (Perciformes: Serranidae) of the Pacific Ocean. Parasitology International, 53: 327-335.

Ostlund-Nilsson, S. and G. Nilsson (2004). Breathing with a mouth full of eggs: respiratory consequenses of mouthbrooding in cardinalfish. Proceedings of the Royal Society, London, B, 271: 1015-1022.

Patterson, H.M., M.J. Kingsford and M.T. McCulloch (2004). Elemental signatures of Pomacentrus coelestis otoliths at multiple spatial scales on the Great Barrier Reef, Australia. Marine Ecology Progress Series, 270: 229-239.

Plaisance, L., S. Bouamer and S. Morand (2004). Description and redescription of Haliotrema species (Monogenoidea: Poloyonchoinea: Dactylogyridae) parasitizing butterfly fishes (Teleost: Chaetodontidae) in the Indo-west Pacific Ocean. Parasitology Research, 93: 72-78.

Pochon, X., T.C. LaJeunesse and J. Pawlowski, 2004. Biogeographic partitioning and host specialization among foraminiferan dino?agellate symbionts (Symbiodinium; Dinophyta). Marine Biology, 146: 17-27.

Putz, A. (2004). Sex role preferences and sperm trading in an opisthobranch sea slug. Diploma thesis, University of Muenster, Germany.

Shashar, N., S. Sabah and T.W. Cronin (2004). Transmission of linearly polarized light in seawater: implications for polarization signaling. Journal of Experimental Biology, 207: 3619-3628.

Siebeck, U.E. (2004). Communication in coral reef fish: the role of ultraviolet colour patterns in damselfish terrritorial behaviour. Animal Behaviour, 68: 273-282.

Simpson, S.D., M.G. Meekan, R.D. McCauley and A. Jeffs (2004). Attraction of settlement-stage coral reef fishes to reef noise. Marine Ecology Progress Series, 276: 263-268.

Smith-Vaniz, W.F. (2004). Descriptions of six new species of jawfishes (Opistognathidae: Opistognathus) from Australia. Records of the Australian Museum, 56: 209 - 224.

Syms, C. and G.P. Jones (2004). Habitat structure, disturbance and the composition of sand-dwelling goby assemblages in a coral reef lagoon. Marine Ecology Progress Series, 268: 221-230.

Thacker, C. (2004). Phylogeny and species boundaries in the gobiid genus Gnatholepis (Teleostei: Perciformes). Zoological Journal of the Linnean Society, 142: 573-582.

Tolimieri, N., O. Haine, A. Jeffs, R. McCauley and J. Montgomery (2004). Directional orientation of pomacentrid larvae to ambient reef sound. Coral Reefs, 23: 184-191.

True, J.D. (2004). Massive Porites corals as indicators of environmental change. PhD thesis, James Cook University.

Uthicke, S., T.D. O'Hara and M. Byrne (2004). Species composition and molecular phylogeny of the Indo-Pacific teatfish (Echinodermata: Holothurioidea) beche-de-mer fishery. Marine and Freshwater Research, 55: 837-848.

Wainwright, P.C., D.R. Bellwood, M.W. Westneat, J.R. Grubich and A.S. Hoey (2004). A functional morphospace for the skull of labrid fishes: patterns of diversity in a complex biomechanical system. Biological Journal of the Linnean Society, 82: 1-25.

Walker, S.P.W. and M.I. McCormick (2004). Otolith-check formation and accelerated gorwth associated with sex change in an annual protogynous tropical fish. Marine Ecology Progress Series, 266: 201-212.

Watson, W. and H.J. Walker Jr. (2004). The world's smallest vertebrate, Schindleria brevipinguis, a new paedomorphic species in the family Schlindleriidae (Perciformes: Gobioidei). Records of the Australian Museum, 56: 139-142.

Whittington, I.D., 2004. The Capsalidae (Monogenea: Monopisthocotylea): a review of diversity, classification and phylogeny with a note about species complexes. Folia Parasitologica, 51: 109-122.

Willis, B.L., C.A. Page and E.A. Dinsdale (2004). Coral disease on the Great Barrier Reef. Chapter 3 in "Coral Health and Disease", E. Rosenberg and Y. Loya (eds.), Springer-Verlag, Berlin.

Wilson, S.K. (2004). Growth, mortality and turnover rates of a small detritivorous fish. Marine Ecology Progress Series, 284: 253-259.

Wolstenholme, J.K. (2004). Temporal reproductive isolation and gametic compatibility are evolutionary mechanisms in the Acropora humilis species group (Cnidaria; Scleractinia). Marine Biology, 144: 567-582.