Bellwood, D.R. (2003). Origins and escalation of herbivory in fishes: a functional perspective. Palaeobiology, 29: 71-83.

Bellwood, D.R., A.S. Hoey and J.H. Choat (2003). Limited functional redundancy in high diversity systems: resilience and ecosystem function on coral reefs. Ecology Letters, 6: 281-285.

Birrell, C.L. (2003). Influences of benthic algae on coral settlement and post-settlement survival: implications for the recovery of disturbed and degraded reefs. MSc thesis, James Cook University.

Caley, M.J. and P.L. Munday ( 2003). Growth trades off with habitat specialization. Proceedings of the Royal Society, London, B (Supplement), 2003: S175 - S177.

Caley, M.J. and D. Schluter (2003). Predators favour mimicry in a tropical reef fish. Proceedings of the Royal Society, London, B, 270: 667-672.

Chisholm, J.R.M. (2003). Primary productivity of reef-building crustose coralline algae. Limnology and Oceanography, 48: 1376-1387.

Cronin, T.W., N. Shashar, R.L. Caldwell, J. Marshall, A.G. Cheroske and T.-H. Chiou (2003). Polarization signals in the marine environment. In: "Polarization Science and Remote Sensing", J.A. Shaw and J.S. Tyo (eds.), Proceedings of SPIE, 5158: 75-82. SPIE, Bellingham, WA, USA.

De Sloover, J.R. (2003). Terrestrial vegetation patterns and plant communitites on Pacific coral cays. Scripta Bot. Belg., 24: 155-167.

Elliott, J.P. and D.R. Bellwood (2003). Alimentary tract morphology and diet in three coral reef fish families. Journal of Fish Biology, 63: 1598-1609.

Grutter, A. (2003). Feeding ecology of the fish ectoparasite Gnathia sp. (Crustacea: Isopoda) from the Great Barrier Reef and its implications for fish cleaning behaviour. Marine Ecology Progress Series, 259: 295-302.

Grutter, A.S. and R. Bshary (2003). Cleaner wrasse prefer client mucus: support for partner control mechanisms in cleaning interactions. Proceedings of the Royal Society, London, B. Supplement, 270: S242-S244.

Grutter, A.S., J.M. Murphy and J.H. Choat (2003). Cleaner fish drives local fish diversity on coral reefs. Current Biology, 13: 64-67.

Hubble, M. (2003). The ecological significance of body size in tropical wrasses. PhD thesis, James Cook University.
Jones, C., A.S. Grutter and T.H. Cribb (2003). Rhipidocotyle labroidei n. sp. (Digenea: Bucephalidae) from Labroides dimidiatus (Valenciennes) (Labridae). Zootaxa, 327: 1-5.

Klanten, S.O. (2003). Molecular phylogeny, temporal patterns of lineage diversification and phylogeography of the surgeon fish genus Naso (Acanthuridae). PhD thesis, James Cook University.

Kroon, F.J., P.L. Munday and N.W. Pankhurst (2003). Steroid hormone levels and bi-directional sex change in Gobiodon histrio. Journal of Fish Biology, 62: 153-167.

Lachlan, R.B. (2003). An annotated list of the hawk moths and butterflies (Lepidoptera) of Lizard Island, Queensland. Australian Entomologist, 30: 1-3.

Leis, J.M. (2003). What does larval fish biology tell us about the design and efficacy of marine protected areas? In: J.P. Beumer, A. Grant and D.C. Smith (eds.). "Aquatic Protected Areas: What works best and how do we know?" Proceedings of the World Congress on Aquatic Protected Areas, Cairns. ASFB, North Beach, WA.

Leis, J.M. and B.M. Carson-Ewart (2003). Orientation of pelagic larvae of coral-reef fishes in the ocean. Marine Ecology Progress Series, 252: 239-253.

Leis, J.M., B.M. Carson-Ewart, A.C. Hay and D.H. Cato (2003). Coral-reef sounds enable nocturnal navigation by some reef-fish larvae in some places and at some times. Journal of Fish Biology, 63: 724-737.

Losey, G.S. (2003). Crypsis and communication functions of UV-visible coloration in two coral reef damselfish, Dascyllus aruanus and D. reticulatus. Animal Behaviour, 66: 299-307.

Marshall, N.J. and M. Vorobyev (2003). The design of color signals and color vision in fishes. Chapter 10 (pp. 194-222) in "Sensory Processing in Aquatic Environments", S.P. Collin and N.J. Marshall (eds.). Springer-Verlag, New York.

McCormick, M.I. (2003). Consumption of coral propagules after mass spawning enhances larval quality of damselfish through maternal effects. Oecologia, 136: 37-45.

Messmer, V. (2003). Genetic and experimental analysis of colour variation in coral reef fish (family Pseudochromidae). Honours thesis, James Cook University.

Moore, S.W. (2003). Scrambled eggs: mechanical forces as ecological factors in early development. Evolution and Development, 5: 61-66.

Muehlenhardt-Siegel, U. (2003). Shallow-water cumacean crustacea from Australia and Lombok (Indonesia): families Bodotriidae and Leuconidae. Records of the South Australian Museum, 36: 21-57.

Munday, P.L., P.J. Eyre and G.P. Jones (2003). Ecological mechanisms for coexistence of colour polymorphism in a coral-reef fish: an experimental evaluation. Oecologia, 137: 519-526.

Munday, P.L., M. Schubert, J.A. Baggio, G.P. Jones, M.J. Caley and A.S. Grutter (2003). Skin toxins and external parasitism of coral-dwelling gobies. Journal of Fish Biology, 62: 976-981.

Myers, M.R. (2003). Coral reef monitoring for management purposes and the impact of marine protected areas on benthic communities on the Great Barrier Reef. Doctor of Environmental Science and Engineering thesis, University of California Los Angeles.

Nilsson, G.E. and S. Ostlund-Nilsson (2003). Hypoxia in paradise: widespread hypoxia tolerance in coral reef fishes. Proceedings of the Royal Society London Ser. B. (Biology Letters Supplement, published online 10.09.03), 271: S30-S33.

Nilsson, G.E. and S. Ostlund-Nilsson (2003). Hypoxia on coral reefs and hypoxia tolerance in coral reef fish. In: "Fish physiology, toxicology, and water quality: Proceedings of the Seventh International Symposium, Tallinn, Estonia, May 12-15, 2003", G. Rupp and M.D. White (eds.) Ecosystems Research Division, Athens, Georgia, USA.

Olson, P.D., T.H. Cribb, V.V. Tkach, R.A. Bray and D.T.J. Littlewood (2003). Phylogeny and classification of the Digenea (Platyhelminthes: Trematoda). International Journal for Parasitology, 33: 733-755.

Pankhurst, P.M. and N.W. Pankhurst (2003). Plasma steroid levels and follicular development in the female staghorn damselfish Amblyglyphidodon curacao. Fish Physiology and Biochemistry, 28: 357-358.

Patterson, H.M. (2003). Otolith chemsitry, early life history, and potential self-recruitment of coral reef fishes. PhD thesis, James Cook University.

Riegl, B. and A. Antonius (2003). Halofolliculina skeleton eroding band (SEB): a coral disease with fossilization potential? Coral Reefs, 22: 48.

Schubert, M., P.L. Munday, M.J. Caley, G.P. Jones and L.E. Llewellyn. (2003). The toxicity of skin secretions from coral-dwelling gobies and their potential role as a predator deterrent. Environmental Biology of Fishes, 67: 359-367.

Sundberg, P., R. Gibson and U. Olsson (2003). Phylogenetic analysis of a group of palaeonemerteans (Nemertea) including two new species from Queensland and the Great Barrier Reef, Australia. Zoologica Scripta, 32: 279-296.

Wilson, S.K., D.R. Bellwood, J.H. Choat and M.J. Furnas (2003). Detritus in the epilithic algal matrix and its use by coral reef fishes. Oceanography and Marine Biology: an Annual Review, 41: 279-309.

Wolstenholme, J.K. (2003). Species boundaries in scleractinial corals: a case study of the Acropora humilis species group. PhD thesis, James Cook University.

Zeller, D., S.L. Stoute and G.R. Russ (2003). Movements of reef fishes across marine reserve boundaries: effects of manipulating a density gradient. Marine Ecology Progress Series, 254: 269-280.