Ahyong, S.T., 2001. Revision of the stomatopod Crustacea. Records of the Australian Museum, Supplement 26: 1-326.

Antonius, A. and D. Lipscomb (2001). First protozoan coral-killer identified in the Indo-Pacific. Atoll Research Bulletin, 481-493: 1-21.

Baird, A.H. (2001). The ecology of coral larvae: settlement patterns, habitat selection and the length of the larval phase. PhD thesis, James Cook University.

Bay, L.K., G.P. Jones and M.I. McCormick (2001). Habitat selection and aggression as determinants of spatial segregation among damselfish on a coral reef. Coral Reefs, 20: 289-298.

Bellwood, D.R. and P.C. Wainwright (2001). Locomotion in labrid fishes: implications for habitat use and cross-shelf biogeography on the Great Barrier Reef. Coral Reefs, 20: 139-150.

Bray, R.A. and T.H. Cribb (2001). Weketrema gen. n., a new genus for Weketrema hawaiiense (Yamaguti, 1970) comb. n. (Digenea: Lecithasteridae) recently found in Australian marine fishes. Folia Parasitologica, 48: 109-114.

Bray, S.L. (2001). Geography and the co-variation of life-history traits in the damselfish, Pomacentrus moluccensis. Honours thesis, James Cook University.

Cribb, T. H., R.A. Bray, D.T.J. Littlewood, S. Pichelin and E.A. Herniou (2001). The Digenea. In: Interrelationships of the Platyhelminthes. D.T.J. Littlewood and R. A. Bray. London, Taylor & Francis: 168-185.

Cronin, T.W., R.L. Caldwell and J. Marshall (2001). Tunable colour vision in a mantis shrimp. Nature, 411 (31 May 2001): 547-548.

Crossman, D.J., J.H. Choat, K.D. Clements, T. Hardy and J. McConochie (2001). Detritus as food for grazing fishes on coral reefs. Limnology and Oceanography, 46: 1596-1605.

Eagle, J.V., G.P. Jones and M.I. McCormick (2001). A multi-scale study of the relationships between habitat use and the distribution and abundance patterns of three coral reef angelfishes (Pomacanthidae). Marine Ecology Progress Series, 214: 253-265.

Emslie, M.J. and G.P. Jones (2001). Patterns of embryo mortality in a demersally spawning coral reef fish and the role of predatory fishes. Environmental Biology of Fishes, 60(4): 363-373.

Ferry-Graham, L.A., P.C. Wainwright, M.W. Westneat and D.R. Bellwood (2001). Modulation of prey capture kinematics in the cheeklined wrasse Oxycheilinus digrammus (Teleostei: Labridae). Journal of Experimental Zoology, 290: 88-100.

Fulton, C.J., D.R. Bellwood and P.C. Wainwright (2001). The relationship between swimming ability and habitat use in wrasses. Marine Biology, 139: 25-33.

Gedamke, J., D.P. Costa and A. Dunstan (2001). Localization and visual verification of a complex minke whale vocalization. Journal of the Acoustical Society of America, 109: 3038-3047.

Glover, E.A. and J.D. Taylor (2001). Systematic revision of Australian and Indo-Pacific Lucinidae (Mollusca: Bivalvia): Pillucina, Wallucina and descriptions of two new genera and four new species. Records of the Australian Museum, 53: 263-292.

Grutter, A.S. (2001). Parasite infection rather than tactile stimulation is the proximate cause of cleaning behaviour in reef fish. Proceedings of the Royal Society London B 268: 1361-1365.

Gust, N., J.H. Choat and M.I. McCormick (2001). Spatial variability in reef fish distribution, abundance, size and biomass: a multi-scale analysis. Marine Ecology Progress Series, 214: 237-251.

Hall, V.R. (2001). The response of Acropora hyacinthus and Montipora tuberculosa to three different types of colony damage: scraping injury, tissue mortality and breakage. Journal of Experimental Marine Biology and Ecology, 264: 209-223.

Hayward, P.J. (2001). The identity of two species of cyphonautes larvae (Bryozoa: Cheilostomata) from Lizard Island, Great Barrier Reef, Australia. Journal of the Marine Biological Association of the United Kingdom, 81: 995-999.

Kritzer, J.P. (2001). Patterns of spatial variation in the population biology of a coral reef fish and implications for metapopulation dynamics. PhD thesis, James Cook University.

Kuiter, R.H. (2001). Revision of the Australian seahorses of the genus Hippocampus (Sygnathiformes: Sygnathidae) with descriptions of nine new species. Records of the Australian Museum, 53: 293-340.

Lange, R., M. Bergbauer, U. Szewzyk, and J. Reitner, 2001. Soluble proteins control growth of skeleton crystals in three coralline demosponges. Facies, 45: 195-202.

Lukoschek, V. and M.I. McCormick (2001). Ontogeny of diet changes in a tropical benthic carnivorous fish, Parupeneus barberinus (Mullidae): relationship between foraging behaviour, habitat use, jaw size, and prey selection. Marine Biology, 138: 1099-1113.

Maida, M., P.W. Sammarco, J.C. Coll (2001). Effects of soft corals on scleractinial coral recruitment. II: Allelopathy, spat survivorship and reef community structure. Marine Ecology, 22: 397-414.

Marnane, M.J. (2001). The trophic role of cardinalfishes (family Apogonidae) on coral reefs. PhD thesis, James Cook University.

Munday, P.L. (2001). Fitness consequences of habitat use and competition among coral-dwelling fishes. Oecologia, 128: 585-593.

Munday, P.L., G.P. Jones and M.J. Caley (2001). Interspecific competition and coexistence in a guild of coral-dwelling fishes. Ecology, 82(8): 2177-2189.

Negri, A.P., N.S. Webster, R.T. Hill and A.J. Heyward (2001). Metamorphosis of broadcast spawning corals in response to bacteria isolated from crustose algae. Marine Ecology Progress Series, 223: 121-131.

O'Dor, R.K., J.P. Aitken, R.C. Babcock, S.K. Bolden, S. Seino, D.C. Zeller and G.D. Jackson (2001). Using radio-acoustic positioning and telemetry (RAPT) to define and assess marine protected areas (MPAs). In: J.R. Sibert and J.L. Nielsen (eds.), Electronic Tagging and Tracking in Marine Fisheries, 147-166. Kluwer Academic Publishers: Netherlands.

Pankhurst, N.W. (2001). Stress inhibition of reproductive endocrine processes in a natural population of the spiny damselfish Acanthochromis polyacanthus. Marine and Freshwater Research, 52: 753-761.

Puglisi, M., 2001. Ecological clues as a strategy for finding novel biomedical leads from Pacific gorgonian corals. PhD thesis, University of Mississippi, USA.

Pratchett, M.S. (2001). Dynamics of outbreak populations of crown-of-thorns starfish (Acanthaster planci L.), and their effects on coral reef ecosystems. PhD thesis, James Cook University.

Pratchett, M.S. (2001). Influence of coral symbionts on feeding preferences of crown-of-thorns starfish Acanthaster planci in the western Pacific. Marine Ecology Progress Series, 214: 111-119.

Pratchett, M.S., N. Gust, G. Goby and S.O. Klanten (2001). Consumption of coral propagules represents a significant trophic link between corals and reef fish. Coral Reefs, 20: 13-17.

Purcell, S.W. and D.R. Bellwood (2001). Spatial patterns of epilithic algal and detrital resources on a windward coral reef. Coral Reefs, 20(2): 117-125.

Shields, J.D. (2001). Ovicides julieae n.gen., n. sp. (Nermertea: Carcinonemertidae) on xanthid crabs from the Great Barrier Reef, Australia. Journal of Crustacean Biology, 21(1): 304-312.

Siebeck, U.E. and N.J. Marshall (2001). Ocular media transmission of coral reef fish - can coral reef fish see ultraviolet light? Vision Research, 41: 133-149.

Stapleton, B.L., G.M. Cameron and M.L. Garson, 2001. New chlorinated peptides from the tropical marine sponge Dysidea sp. Tetrahedron, 57: 4603-4607.

Stewart, B.D. and G.P. Jones (2001). Associations between the abundance of piscivorous fishes and their prey on coral reefs: implications for prey-fish mortality. Marine Biology, 138(2): 383-397.

Syms, C. and G.P. Jones (2001). Soft corals exert no direct effects on coral reef fish assemblages. Oecologia, 127: 560-571.

Thompson, V.J. (2001). Habitat structure, social organisation and the reproductive biology of group-dwelling gobies. Honours thesis, James Cook University.

Uthicke, S. (2001). Nutrient regeneration by abundant coral reef holothurians. Journal of Experimental Marine Biology and Ecology, 265: 153-170.

Waegele, H. and G. Johnsen (2001). Observations on the histology and photosynthetic performance of "solar-powered" opisthobranchs (Mollusca, Gastropoda, Opisthobranchia) containing symbiotic chloroplasts or zooxanthellae. Organisms, Diversity and Evolution, 1: 193-210.

Webster, M.S. (2001). Factors affecting the dynamics and regulation of coral-reef fish populations. PhD thesis, Oregon State University, Corvallis, OR, USA.

Welch, D.J. (2001). Bias in size and age samples of Plectropomus leopardus, taken by line fishing among regions and management zones of the Great Barrier Reef. MSc thesis, James Cook University.

Wilson, S.K. (2001). An investigation into the trophic nature of small reef fish from the tribe Salariini, family Blennidae. PhD thesis, James Cook University.

Wilson, S. (2001). Multiscale habitat associations of detrivorous blennies (Blenniidae: Salariini). Coral Reefs, 20: 245-251.

Wilson, S.K., K. Burns and S. Codi (2001). Sources of dietary lipids in the coral reef blenny Salarias patzneri. Marine Ecology Progress Series, 222: 291-296.

Wilson, S., K. Burns and S. Codi (2001). Identifying sources of organic matter in sediments from a detritivorous coral reef fish territory. Organic Geochemistry, 32: 1257-1269.